JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DICER1_chr14_95081228_95162529	0/0	c0013	5769	1	0	0	0	0	1	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0014	5769	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0015	5769	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0016	5769	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0017	5769	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0018	5764	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0019	5751	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0020	5769	1	0	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0021	5769	1	0	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DIDO1_chr20_62872743_62931505	0/0	c0001	6723	81	10	15	42	5	9	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0002	6723	65	5	12	37	0	11	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0003	6723	47	4	5	32	2	4	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0004	6723	14	12	0	1	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0005	6723	12	10	2	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0006	6723	9	5	3	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0007	6723	6	0	0	6	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0008	6723	5	4	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0009	6723	4	3	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0010	6723	4	4	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0011	6723	4	1	2	0	0	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0012	6723	3	0	0	3	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0013	6723	3	1	2	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0014	6723	3	3	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0015	6723	3	2	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0016	6723	3	3	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0017	6723	2	0	0	2	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0018	6723	2	0	2	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0019	6723	2	2	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/1	c0020	6723	2	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0021	6723	2	2	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0022	6723	2	0	0	2	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0023	6723	2	1	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0024	6723	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0025	6723	1	0	0	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0026	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0027	6723	1	0	0	0	0	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0028	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0029	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0030	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0031	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0032	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0033	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0034	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0035	6723	1	0	0	0	0	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0036	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0037	6723	1	0	0	0	0	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0038	6723	1	0	0	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0039	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0040	6711	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0041	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505