JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIDO1_chr20_62872743_62931505	0/0	c0042	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0043	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0044	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0045	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	1/0	c0046	6723	1	0	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0047	6723	1	0	0	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0048	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0049	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0050	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0051	6723	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0052	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0053	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0054	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0055	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0056	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0057	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0058	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0059	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0060	6723	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0061	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0062	6723	1	0	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	c0063	6723	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIMT1_chr5_62382254_62408905	0/1	c0001	942	278	64	36	147	9	21	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	1/0	c0002	942	124	21	26	51	7	18	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	c0003	942	1	0	0	0	0	1	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	c0004	942	1	1	0	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIO1_chr1_53889187_53916086	1/1	c0001	750	390	66	74	182	18	48	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0002	750	53	29	3	20	0	1	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0003	750	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0004	750	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0005	750	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0006	750	1	0	0	1	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0007	750	1	0	0	0	0	1	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0008	750	1	0	1	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0009	750	1	0	0	1	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0010	750	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	c0011	750	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO2_chr14_80192526_80216504	1/1	c0001	822	225	37	38	122	9	17	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	c0002	822	176	54	30	60	7	25	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	c0003	822	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	c0004	822	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	c0005	822	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO3_chr14_101556495_101568452	1/1	c0001	915	383	100	68	155	12	46	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	c0002	915	1	0	0	1	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	c0003	915	1	0	0	1	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	c0004	915	1	0	0	1	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIP2A_chr21_46453891_46575015	1/0	c0001	4716	72	13	19	31	1	7	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0002	4716	60	8	11	34	0	7	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0003	4716	59	2	6	47	0	4	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0004	4716	36	4	10	13	4	5	copy fasta	DIP2A	chr21	46453891	46575015