JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIP2A_chr21_46453891_46575015	0/0	c0005	4716	34	22	4	5	0	3	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0006	4716	17	16	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/1	c0007	4716	13	1	5	5	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0008	4716	9	0	1	8	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0009	4716	7	6	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0010	4716	5	0	2	0	1	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0011	4716	4	4	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0012	4716	3	3	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0013	4716	3	3	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0014	4716	3	0	0	3	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0015	4716	3	0	0	3	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0016	4716	3	0	0	3	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0017	4716	3	0	1	0	0	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0018	4716	3	0	0	0	1	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0019	4716	3	3	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0020	4716	2	0	1	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0021	4716	2	0	0	0	0	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0022	4716	2	0	0	0	0	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0023	4716	2	0	2	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0024	4716	2	0	1	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0025	4716	2	0	1	0	0	1	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0026	4716	2	1	0	0	0	1	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0027	4716	2	0	0	0	0	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0028	4716	1	0	0	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0029	4716	1	0	0	0	0	1	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0030	4716	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0031	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0032	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0033	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0034	4716	1	0	0	0	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0035	4716	1	0	0	0	0	1	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0036	4716	1	0	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0037	4716	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0038	4716	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0039	4716	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0040	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0041	4716	1	0	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0042	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0043	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0044	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	c0045	4716	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2B_chr12_50499985_50753657	0/0	c0001	4731	111	27	29	35	5	15	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/1	c0002	4731	81	22	14	28	5	11	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0003	4731	53	5	11	34	0	3	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	1/0	c0004	4731	10	8	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0005	4731	5	5	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0006	4731	4	4	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0007	4731	2	2	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0008	4731	2	2	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0009	4731	2	0	2	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657