JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIP2B_chr12_50499985_50753657	0/0	c0010	4731	2	0	0	2	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0011	4731	2	0	0	1	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0012	4731	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0013	4731	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0014	4703	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0015	4731	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0016	4731	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0017	4731	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0018	4731	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0019	4731	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0020	4731	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	c0021	4731	1	0	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2C_chr10_269201_694668	0/0	c0001	4671	24	4	6	11	2	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0002	4671	19	5	4	10	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0003	4671	9	0	1	8	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0004	4671	6	1	1	2	1	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0005	4671	5	2	0	2	0	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0006	4671	4	1	3	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0007	4671	3	1	2	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0008	4671	2	0	2	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0009	4671	2	2	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0010	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0011	4671	1	0	0	1	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0012	4671	1	0	0	0	1	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0013	4671	1	0	1	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0014	4671	1	0	0	0	0	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0015	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0016	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0017	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0018	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0019	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0020	4671	1	0	0	0	0	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0021	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0022	4671	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	c0023	4671	1	0	0	0	0	1	copy fasta	DIP2C	chr10	269201	694668
DIPK1A_chr1_92837167_92966462	1/0	c0001	1287	186	69	36	44	14	22	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0002	1287	3	3	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0003	1287	3	3	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0004	1287	2	2	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0005	1287	2	2	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0006	1287	1	1	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0007	1287	1	1	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/1	c0008	1287	1	0	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	c0009	1287	1	1	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1B_chr9_136707572_136729742	0/0	c0001	1296	239	23	45	141	10	20	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/1	c0002	1296	86	19	22	33	5	6	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	1/0	c0003	1296	44	26	3	1	0	13	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0004	1296	23	3	12	0	1	7	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0005	1296	8	8	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0006	1296	3	3	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742