JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIPK1B_chr9_136707572_136729742	0/0	c0007	1296	2	2	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0008	1296	2	2	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0009	1296	2	0	0	1	0	1	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0010	1296	1	0	0	0	0	1	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0011	1296	1	0	0	1	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0012	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0013	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0014	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0015	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0016	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0017	1296	1	0	1	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0018	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0019	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0020	1296	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0021	1296	1	0	1	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	c0022	1296	1	0	0	1	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1C_chr18_74429775_74462308	0/1	c0001	1260	266	48	48	130	8	31	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0002	1260	132	30	30	49	10	13	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0003	1260	25	2	1	22	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	1/0	c0004	1260	8	6	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0005	1260	5	0	0	5	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0006	1260	5	0	0	5	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0007	1260	5	0	0	5	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0008	1260	4	1	0	3	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0009	1260	3	3	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0010	1260	3	0	0	3	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0011	1260	3	3	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0012	1260	3	1	1	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0013	1260	2	0	0	2	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0014	1260	2	0	0	0	0	2	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0015	1260	2	0	0	0	0	2	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0016	1260	2	0	2	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0017	1260	2	2	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0018	1260	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0019	1260	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0020	1260	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0021	1260	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0022	1260	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0023	1260	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0024	1260	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0025	1260	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0026	1260	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0027	1260	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0028	1260	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	c0029	1260	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK2A_chr3_143966823_143997368	1/1	c0001	1293	315	55	60	153	15	30	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0002	1293	39	28	3	5	0	3	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0003	1293	37	0	4	27	1	5	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0004	1293	7	7	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0005	1293	2	2	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368