JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIPK2A_chr3_143966823_143997368	0/0	c0006	1293	2	0	2	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0007	1293	1	0	0	0	0	1	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0008	1293	1	0	0	0	0	1	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0009	1293	1	0	0	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0010	1293	1	0	1	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0011	1293	1	1	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	c0012	1293	1	1	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2B_chrX_45143373_45205876	0/0	c0001	1302	146	1	22	105	4	14	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	1/1	c0002	1302	130	48	30	26	9	15	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0003	1302	7	6	1	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0004	1302	3	3	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0005	1302	3	1	0	0	0	2	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0006	1302	2	0	2	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0007	1302	2	2	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0008	1302	1	0	0	0	0	1	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0009	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0010	1304	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0011	1303	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0012	1303	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0013	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0014	1302	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0015	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0016	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0017	1302	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0018	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0019	1301	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0020	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	c0021	1302	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIRAS1_chr19_2709567_2726372	1/1	c0001	597	291	92	65	78	16	38	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	c0002	597	117	2	13	94	2	6	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	c0003	597	2	0	0	2	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	c0004	597	2	0	0	0	0	2	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS2_chr9_90604832_90647824	1/1	c0001	600	432	85	79	216	10	40	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	c0002	600	8	7	1	0	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS3_chr1_68040962_68055627	1/1	c0001	690	345	66	69	153	14	41	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	c0002	690	26	24	1	0	0	1	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	c0003	690	2	0	2	0	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	c0004	690	1	1	0	0	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	c0005	690	1	0	0	1	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	c0006	690	1	1	0	0	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIS3L2_chr2_231956713_232342192	1/1	c0001	2658	158	51	30	52	4	19	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0002	2658	60	3	9	43	2	3	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0003	2658	33	19	6	5	1	2	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0004	2658	12	8	2	0	0	2	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0005	2658	8	7	1	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0006	2658	7	0	0	1	2	4	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0007	2658	6	0	3	1	0	2	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0008	2658	4	0	4	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0009	2658	3	1	1	1	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0010	2658	3	1	1	0	0	1	copy fasta	DIS3L2	chr2	231956713	232342192