JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIS3L2_chr2_231956713_232342192	0/0	c0011	2658	2	2	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0012	2658	1	0	1	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0013	2658	1	1	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0014	2658	1	0	0	1	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0015	2658	1	0	0	1	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0016	2658	1	0	0	1	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0017	2658	1	0	0	0	0	1	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0018	2658	1	0	0	0	1	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	c0019	2658	1	1	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L_chr15_66288568_66338898	1/0	c0001	3165	173	53	27	78	3	11	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0002	3165	89	9	20	48	2	10	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/1	c0003	3165	61	2	15	25	6	12	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0004	3165	23	4	4	11	0	4	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0005	3165	17	1	4	12	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0006	3165	8	1	2	0	3	2	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0007	3165	5	5	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0008	3165	5	5	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0009	3165	5	5	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0010	3165	2	2	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0011	3165	2	0	0	2	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0012	3165	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0013	3165	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0014	3165	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0015	3165	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0016	3165	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0017	3165	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0018	3165	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0019	3165	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0020	3165	1	0	0	0	0	1	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	c0021	3165	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3_chr13_72747169_72786900	0/1	c0001	2877	167	61	26	57	6	16	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0002	2877	135	7	23	84	3	18	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	1/0	c0003	2877	97	20	20	45	4	7	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0004	2877	3	0	0	3	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0005	2877	2	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0006	2877	2	0	1	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0007	2877	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0008	2877	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0009	2877	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0010	2877	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0011	2877	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0012	2877	1	0	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0013	2877	1	0	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0014	2877	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0015	2877	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0016	2877	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0017	2877	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0018	2877	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0019	2877	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0020	2877	1	0	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900