JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIS3_chr13_72747169_72786900	0/0	c0021	2877	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	c0022	2877	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DISC1_chr1_231621790_232046272	1/0	c0001	2565	13	2	3	5	0	2	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0002	2565	5	2	1	2	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/1	c0003	2565	4	1	0	1	0	1	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0004	2565	4	0	2	2	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0005	2565	4	1	0	3	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0006	2565	2	1	1	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0007	2565	2	2	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0008	2565	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0009	2565	1	0	1	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0010	2565	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0011	2565	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0012	2565	1	1	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	c0013	2565	1	0	0	0	0	1	copy fasta	DISC1	chr1	231621790	232046272
DISP1_chr1_222810039_223010995	0/0	c0001	4575	116	22	28	59	3	4	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0002	4575	34	9	9	13	0	3	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0003	4575	26	1	8	12	0	5	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0004	4575	23	4	4	14	0	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0005	4575	18	1	4	8	1	4	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	1/0	c0006	4575	16	5	2	5	1	2	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0007	4575	14	3	3	5	2	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0008	4575	12	0	3	0	3	6	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0009	4575	10	3	4	1	0	2	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0010	4575	9	9	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0011	4575	7	6	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0012	4575	6	0	0	5	0	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0013	4575	6	0	0	5	1	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0014	4575	4	0	0	2	1	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/1	c0015	4575	4	0	3	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0016	4575	4	3	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0017	4575	3	3	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0018	4575	2	0	0	0	0	2	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0019	4575	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0020	4575	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0021	4575	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0022	4575	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0023	4575	2	2	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0024	4575	1	0	0	0	0	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0025	4575	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0026	4575	1	0	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0027	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0028	4575	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0029	4575	1	0	0	0	0	1	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0030	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0031	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0032	4575	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0033	4575	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0034	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0035	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995