JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DISP1_chr1_222810039_223010995	0/0	c0036	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0037	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0038	4575	1	0	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0039	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0040	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0041	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0042	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0043	4575	1	0	0	1	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0044	4575	1	0	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0045	4575	1	0	1	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0046	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	c0047	4575	1	1	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP2_chr15_40353219_40383621	1/0	c0001	4206	87	23	18	29	5	11	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0002	4206	84	3	1	70	0	10	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0003	4206	54	26	7	16	1	4	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0004	4206	41	0	2	26	1	12	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0005	4206	19	7	6	2	3	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0006	4206	16	15	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0007	4206	16	1	9	3	2	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0008	4206	14	0	11	3	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0009	4206	7	0	0	7	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/1	c0010	4206	5	0	2	0	1	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0011	4206	5	0	3	0	2	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0012	4206	4	4	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0013	4206	3	3	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0014	4206	3	0	0	3	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0015	4206	3	0	2	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0016	4206	2	0	0	0	1	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0017	4206	2	0	0	2	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0018	4206	2	2	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0019	4206	2	0	0	2	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0020	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0021	4206	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0022	4206	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0023	4206	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0024	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0025	4206	1	0	0	0	1	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0026	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0027	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0028	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0029	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0030	4206	1	0	0	0	1	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0031	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0032	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0033	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0034	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0035	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0036	4206	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0037	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0038	4206	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621