JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DISP2_chr15_40353219_40383621	0/0	c0039	4206	1	0	0	0	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0040	4206	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0041	4206	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0042	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0043	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0044	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0045	4206	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	c0046	4206	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP3_chr1_11474155_11542551	1/1	c0001	4179	69	5	6	50	0	6	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0002	4179	61	3	3	47	1	7	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0003	4179	58	2	12	33	6	5	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0004	4179	38	17	6	8	1	6	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0005	4179	15	10	0	4	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0006	4179	12	0	3	6	0	3	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0007	4179	11	11	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0008	4179	9	0	4	4	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0009	4179	9	0	7	0	0	2	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0010	4179	8	8	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0011	4179	7	0	0	4	0	3	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0012	4179	4	0	4	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0013	4179	4	3	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0014	4179	4	0	0	4	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0015	4179	3	3	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0016	4179	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0017	4179	2	0	1	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0018	4179	2	0	0	2	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0019	4179	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0020	4179	2	0	0	0	2	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0021	4179	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0022	4179	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0023	4179	1	0	0	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0024	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0025	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0026	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0027	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0028	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0029	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0030	4179	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0031	4179	1	0	0	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0032	4179	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0033	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0034	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0035	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0036	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0037	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0038	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0039	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0040	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0041	4179	1	0	0	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0042	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551