JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DISP3_chr1_11474155_11542551	0/0	c0043	4179	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0044	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0045	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0046	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0047	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0048	4179	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0049	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0050	4179	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0051	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0052	4179	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0053	4179	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	c0054	4179	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DIXDC1_chr11_111932343_112027653	1/1	c0001	2052	248	71	43	107	4	21	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0002	2052	7	7	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0003	2052	6	5	1	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0004	2052	4	0	0	4	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0005	2052	4	4	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0006	2052	2	0	0	0	0	2	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0007	2052	2	2	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0008	2052	2	2	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0009	2052	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0010	2052	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	c0011	2052	1	0	0	0	0	1	copy fasta	DIXDC1	chr11	111932343	112027653
DKC1_chrX_154757864_154782689	0/1	c0001	1545	247	57	55	97	7	30	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	c0002	1545	26	11	3	10	2	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	c0003	1545	7	0	0	7	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	1/0	c0004	1545	3	2	0	0	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	c0005	1548	3	0	2	0	0	1	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	c0006	1545	2	2	0	0	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	c0007	1545	1	0	0	1	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKK1_chr10_52309281_52322657	0/0	c0001	801	222	72	37	79	10	24	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	1/1	c0002	801	184	21	32	106	3	20	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	c0003	801	2	1	1	0	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	c0004	801	1	0	0	1	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	c0005	801	1	0	0	0	1	0	copy fasta	DKK1	chr10	52309281	52322657
DKK2_chr4_106916802_107041313	1/1	c0001	780	173	66	29	47	8	21	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	c0002	780	39	0	12	22	2	3	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	c0003	780	2	0	0	2	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	c0004	780	1	0	0	1	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	c0005	780	1	0	1	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	c0006	780	1	0	0	1	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	c0007	780	1	0	0	1	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK3_chr11_11958036_12013626	0/1	c0001	1053	305	59	52	140	15	38	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	1/0	c0002	1053	88	22	13	44	1	7	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0003	1053	7	7	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0004	1053	4	2	2	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0005	1053	3	3	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0007	1053	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0008	1053	1	0	1	0	0	0	copy fasta	DKK3	chr11	11958036	12013626