JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DKK3_chr11_11958036_12013626	0/0	c0009	1053	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0010	1053	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0011	1053	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0012	1053	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0013	1053	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	c0014	1053	1	0	0	0	0	1	copy fasta	DKK3	chr11	11958036	12013626
DKK4_chr8_42369063_42382229	1/1	c0001	675	234	21	51	115	12	33	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	c0002	675	141	72	5	52	0	12	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	c0003	675	2	2	0	0	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	c0004	675	1	0	0	0	0	1	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	c0005	675	1	0	0	1	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	c0006	675	1	1	0	0	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKKL1_chr19_49358877_49380116	1/0	c0001	729	150	23	37	71	6	12	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/1	c0002	729	114	16	15	62	4	16	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0003	729	71	20	10	33	3	5	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0004	729	19	18	1	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0005	729	18	5	5	4	0	4	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0006	729	10	8	2	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0007	729	5	2	2	0	1	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0008	729	5	0	0	5	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0009	729	1	0	0	0	0	1	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0010	729	1	0	0	1	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0011	729	1	1	0	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	c0012	729	1	1	0	0	0	0	copy fasta	DKKL1	chr19	49358877	49380116
DLAT_chr11_112020408_112069404	1/1	c0001	1944	129	11	30	62	8	16	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0002	1944	114	9	23	67	2	13	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0003	1944	52	46	6	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0004	1944	15	15	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0005	1944	11	10	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0006	1944	5	0	0	5	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0007	1944	2	0	2	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0008	1944	2	2	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0009	1944	1	0	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0010	1944	1	0	0	0	0	1	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0011	1944	1	0	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0012	1944	1	0	0	1	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0013	1944	1	1	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	c0014	1944	1	0	0	1	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLC1_chr8_13078361_13519851	0/0	c0001	4587	42	8	10	4	5	15	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/1	c0002	4587	24	5	6	5	2	5	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0003	4587	16	1	4	10	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0004	4587	14	10	0	3	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0005	4587	14	0	4	9	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0006	4587	12	7	1	2	1	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0007	4587	9	6	1	0	0	2	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0008	4587	9	1	1	5	0	2	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0009	4587	7	1	1	5	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	1/0	c0010	4587	6	5	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0011	4587	6	5	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0012	4587	4	1	1	1	0	1	copy fasta	DLC1	chr8	13078361	13519851