JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLC1_chr8_13078361_13519851	0/0	c0013	4587	3	2	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0014	4587	3	3	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0015	4587	3	1	2	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0016	4587	2	2	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0017	4587	2	2	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0018	4587	2	1	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0019	4587	2	0	0	0	1	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0020	4587	2	0	2	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0021	4587	2	0	0	0	1	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0022	4587	2	0	1	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0023	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0024	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0025	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0026	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0027	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0028	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0029	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0030	4587	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0031	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0032	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0033	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0034	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0035	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0036	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0037	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0038	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0039	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0040	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0041	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0042	4587	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0043	4587	1	0	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0044	4587	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0045	4587	1	0	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0046	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0047	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	c0048	4587	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLD_chr7_107886183_107926198	1/1	c0001	1530	371	73	71	174	15	36	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0002	1530	16	16	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0003	1530	5	1	3	0	1	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0004	1530	2	2	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0005	1530	2	2	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0006	1530	2	2	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0007	1530	2	1	1	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0008	1530	1	0	0	1	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0009	1530	1	0	1	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0010	1530	1	0	0	0	0	1	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0011	1530	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0012	1530	1	0	0	1	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	c0013	1530	1	0	0	0	0	1	copy fasta	DLD	chr7	107886183	107926198
DLEC1_chr3_38034208_38129025	0/0	c0001	5268	88	20	18	29	5	16	copy fasta	DLEC1	chr3	38034208	38129025