Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCY1_chr7_45569368_45728116	0/0	c0006	3360	2	2	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/1	c0007	3360	2	0	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0008	3360	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0009	3360	1	0	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0010	3360	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0011	3360	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0012	3360	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0013	3360	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0014	3360	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0015	3360	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0016	3360	1	0	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0017	3360	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	c0018	3360	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY2_chr5_7391138_7835081	0/0	c0001	3308	34	23	9	2	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	1/0	c0002	3276	17	5	2	6	0	3	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/1	c0003	3276	17	7	7	1	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0004	3276	9	9	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0005	3308	8	0	7	1	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0006	3308	6	2	3	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0007	3308	6	6	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0008	3276	5	5	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0009	3308	4	4	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0010	3308	4	0	1	1	1	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0011	3276	4	2	1	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0012	3276	3	2	0	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0013	3308	3	3	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0014	3308	2	2	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0015	3308	2	2	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0016	3308	2	1	0	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0017	3308	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0018	3308	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0019	3276	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0020	3308	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0021	3308	1	0	0	1	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0022	3276	1	0	0	0	0	1	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0023	3308	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0024	3308	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0025	3308	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0026	3308	1	1	0	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0027	3308	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0028	3276	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0029	3276	1	0	0	0	1	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY2_chr5_7391138_7835081	0/0	c0030	3308	1	0	1	0	0	0	copy fasta	ADCY2	chr5	7391138	7835081
ADCY3_chr2_24814169_24925237	0/1	c0001	3435	61	4	8	37	1	10	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0002	3435	59	32	7	13	3	4	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0003	3435	45	8	13	19	2	3	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0004	3435	16	5	0	8	1	2	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	1/0	c0005	3435	14	0	7	1	3	2	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0006	3435	10	6	1	3	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0007	3435	9	4	3	0	0	2	copy fasta	ADCY3	chr2	24814169	24925237