JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLEC1_chr3_38034208_38129025	0/0	c0002	5268	80	4	16	48	3	9	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0003	5268	13	12	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0004	5268	10	4	3	1	1	1	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0005	5268	10	1	3	4	0	2	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0006	5268	7	5	2	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0007	5268	5	0	2	3	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0008	5268	5	0	0	5	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0009	5268	5	0	1	4	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0010	5268	4	0	0	4	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0011	5268	4	1	1	1	1	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0012	5268	3	3	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0013	5268	2	0	1	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0014	5268	2	2	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0015	5268	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0016	5268	2	2	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0017	5268	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0018	5268	2	0	1	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0019	5268	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0020	5268	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0021	5268	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0022	5268	2	2	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0023	5268	2	1	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0024	5268	2	0	0	2	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0025	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0026	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0027	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0028	5268	1	0	0	0	1	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0029	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0030	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0031	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0032	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0033	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0034	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0035	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0036	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0037	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0038	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0039	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0040	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0041	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0042	5268	1	0	0	0	1	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0043	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0044	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0045	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0046	5268	1	0	0	0	0	1	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0047	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0048	5268	1	0	0	0	0	1	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0049	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0050	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0051	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025