JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLEC1_chr3_38034208_38129025	0/0	c0052	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0053	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0054	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0055	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0056	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0057	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0058	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0059	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0060	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0061	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0062	5268	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0063	5268	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	c0064	5268	1	0	1	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEU7_chr13_50817905_50848692	1/0	c0001	666	310	79	64	117	11	38	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/1	c0002	666	100	10	16	63	3	7	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	c0003	666	13	0	0	13	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	c0004	666	6	6	0	0	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	c0005	666	1	1	0	0	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	c0006	666	1	0	0	0	0	1	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	c0007	666	1	0	0	1	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLG1_chr3_197037560_197303612	1/0	c0001	2682	268	71	54	104	12	26	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0002	2682	35	2	7	16	1	9	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0003	2682	7	6	1	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0004	2682	4	4	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0005	2682	3	0	3	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0006	2682	2	0	0	2	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0007	2682	2	0	0	0	1	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0008	2682	2	0	2	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/1	c0009	2682	1	0	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0010	2682	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0011	2682	1	0	1	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0012	2682	1	0	0	0	0	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0013	2682	1	0	0	0	1	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0014	2682	1	1	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0015	2682	1	0	0	0	0	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0016	2682	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	c0017	2682	1	0	0	0	1	0	copy fasta	DLG1	chr3	197037560	197303612
DLG2_chr11_83450173_85632344	0/0	c0001	2928	13	11	2	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	c0002	2928	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG3_chrX_70439835_70510490	1/1	c0001	2454	264	66	41	114	11	30	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0002	2454	6	4	2	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0003	2453	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0004	2455	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0005	2459	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0006	2456	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0007	2454	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0008	2455	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0009	2454	1	0	1	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	c0010	2465	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG4_chr17_7182187_7222627	0/0	c0001	2175	273	74	57	96	11	35	copy fasta	DLG4	chr17	7182187	7222627