JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLG4_chr17_7182187_7222627	0/0	c0002	2175	95	19	18	46	7	5	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	c0003	2175	2	0	0	0	0	2	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	c0004	2175	2	0	2	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	c0005	2175	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	c0006	2175	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	c0007	2175	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	c0008	2175	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG5_chr10_77785791_77931755	0/0	c0001	5760	69	12	15	30	3	9	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0002	5760	65	0	21	31	3	10	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0003	5760	54	6	6	32	2	8	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0004	5760	25	4	1	20	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0005	5760	9	0	0	9	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0006	5760	9	8	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0007	5760	8	6	1	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0008	5760	6	5	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0009	5760	6	6	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0010	5760	5	4	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0011	5760	5	5	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0012	5760	4	2	2	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0013	5760	4	4	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0014	5760	4	0	0	4	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0015	5760	4	3	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0016	5760	3	0	0	3	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0017	5760	2	0	1	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/1	c0018	5760	2	0	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0019	5760	2	0	1	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0020	5760	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0021	5760	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0022	5760	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0023	5760	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0024	5760	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0025	5760	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0026	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0027	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0028	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0029	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0030	5760	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0031	5760	1	0	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0032	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0033	5760	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0034	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0035	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0036	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0037	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0038	5760	1	0	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0039	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0040	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0041	5760	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0042	5760	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	c0043	5760	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755