JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLK2_chr6_43445352_43460548	0/0	c0006	1152	2	0	2	0	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0007	1152	1	0	0	1	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0008	1152	1	1	0	0	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	c0009	1152	1	0	0	0	0	1	copy fasta	DLK2	chr6	43445352	43460548
DLL1_chr6_170277206_170296078	0/1	c0001	2172	277	68	73	84	18	33	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0002	2172	103	8	6	86	0	3	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0003	2172	5	4	1	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0004	2172	3	0	0	0	0	3	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0005	2172	3	0	0	3	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0006	2172	2	2	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0007	2172	2	2	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0008	2172	2	2	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0009	2172	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0011	2172	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0012	2172	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0013	2172	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0014	2172	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0015	2172	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0016	2172	1	0	1	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0017	2172	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0018	2172	1	0	1	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0019	2172	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0020	2172	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0021	2172	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0022	2172	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0023	2172	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	c0024	2172	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL3_chr19_39493947_39513469	0/0	c0001	1764	161	32	20	91	5	13	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	1/1	c0002	1764	123	12	23	70	1	15	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0003	1764	89	17	24	28	6	14	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0004	1764	17	12	5	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0005	1765	8	0	0	8	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0006	1764	7	7	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0007	1764	3	3	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0008	1764	3	3	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0009	1764	3	3	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0010	1764	3	0	0	3	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0011	1764	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0012	1764	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0013	1764	1	0	1	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0014	1764	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0015	1764	1	1	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0016	1765	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0017	1764	1	1	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0018	1764	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0019	1764	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0020	1764	1	0	1	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	c0021	1764	1	1	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL4_chr15_40924340_40944073	1/1	c0001	2058	353	91	65	137	15	43	copy fasta	DLL4	chr15	40924340	40944073