JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DLL4_chr15_40924340_40944073	0/0	c0002	2058	5	0	0	5	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0003	2058	2	0	0	2	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0004	2058	2	0	1	0	1	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0005	2058	2	0	0	1	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0006	2058	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0007	2058	1	1	0	0	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0008	2058	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0009	2058	1	1	0	0	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0010	2058	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	c0011	2058	1	1	0	0	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLST_chr14_74876916_74908743	0/0	c0001	1362	172	66	30	50	2	24	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	1/1	c0002	1362	122	2	23	78	5	12	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	c0003	1362	89	19	18	44	3	5	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	c0004	1362	3	3	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	c0005	1362	3	1	0	1	0	1	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	c0006	1362	1	0	1	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	c0007	1362	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	c0008	1362	1	0	0	1	0	0	copy fasta	DLST	chr14	74876916	74908743
DLX1_chr2_172080507_172094674	1/1	c0001	768	424	94	78	188	18	44	copy fasta	DLX1	chr2	172080507	172094674
DLX2_chr2_172094438_172107900	1/1	c0001	987	216	70	48	63	9	24	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	c0002	987	150	15	21	89	5	20	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	c0003	990	12	0	2	10	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	c0004	987	10	10	0	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	c0005	987	1	0	1	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	c0006	987	1	1	0	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX3_chr17_49985005_50000224	1/1	c0001	864	219	57	57	61	16	26	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0002	864	121	14	12	88	0	7	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0003	864	87	21	13	47	0	6	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0004	864	2	1	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0005	864	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0006	864	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0007	864	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0008	864	1	0	0	0	0	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0009	864	1	0	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0010	864	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0011	864	1	0	0	0	0	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0012	864	1	0	0	0	0	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	c0013	864	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX4_chr17_49964190_49979959	1/1	c0001	723	390	98	60	172	12	46	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	c0002	723	10	2	4	0	2	2	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	c0003	723	2	0	0	2	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	c0004	723	1	0	1	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	c0005	723	1	0	1	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX5_chr7_97015396_97029831	1/1	c0001	870	444	94	76	208	16	48	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	c0002	870	1	1	0	0	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	c0003	870	1	1	0	0	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	c0004	870	1	0	0	1	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	c0005	870	1	0	0	1	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX6_chr7_97000553_97016040	1/1	c0001	882	355	81	63	165	9	35	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	c0002	885	40	3	6	13	5	13	copy fasta	DLX6	chr7	97000553	97016040