JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMBT1_chr10_122555754_122648736	0/0	c0057	6855	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0058	6855	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0059	7242	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0060	7629	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0061	7242	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0062	7242	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0063	7629	1	0	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0064	7242	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0065	7629	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0066	7629	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0067	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0068	6855	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0069	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0070	7629	1	0	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0071	7629	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0072	6468	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0073	7242	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0074	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0075	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0076	7629	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0077	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0078	6468	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0079	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0080	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0081	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0082	6468	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0083	4971	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0084	7242	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0085	6081	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0086	4971	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0087	6468	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0088	7242	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0089	20349	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0090	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0091	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0092	7242	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0093	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	1/0	c0094	7629	1	0	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0095	6081	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0096	6081	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0097	6081	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0098	6081	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0099	6081	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0100	5358	1	0	0	0	1	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0101	7242	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0102	6855	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0103	7629	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0104	7629	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0105	7242	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0106	6855	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736