Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCY3_chr2_24814169_24925237	0/0	c0008	3435	8	0	5	3	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0009	3435	7	5	2	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0010	3435	7	5	2	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0011	3435	3	3	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0012	3435	3	3	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0013	3435	2	0	0	2	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0014	3435	2	2	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0015	3435	2	0	2	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0016	3435	2	0	0	2	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0017	3435	2	0	1	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0018	3435	2	1	1	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0019	3435	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0020	3435	1	0	0	0	0	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0021	3435	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0022	3435	1	0	0	0	1	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0023	3435	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0024	3435	1	0	0	0	1	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0025	3435	1	0	0	0	0	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0026	3435	1	0	1	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0027	3435	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0028	3435	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0029	3435	1	0	1	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0030	3435	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0031	3435	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0032	3435	1	0	0	0	0	1	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0033	3435	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0034	3435	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0035	3435	1	1	0	0	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY3_chr2_24814169_24925237	0/0	c0036	3435	1	0	0	1	0	0	copy fasta	ADCY3	chr2	24814169	24925237
ADCY4_chr14_24313359_24340071	1/1	c0001	3234	354	68	70	159	16	39	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0002	3234	53	0	0	48	0	5	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0003	3234	12	12	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0004	3234	5	5	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0005	3234	2	0	2	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0006	3234	1	0	0	0	0	1	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0007	3234	1	1	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0008	3234	1	0	1	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0009	3234	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0010	3234	1	0	0	0	0	1	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0011	3234	1	1	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0012	3234	1	0	1	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0013	3234	1	1	0	0	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0014	3234	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0015	3234	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0016	3234	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY4_chr14_24313359_24340071	0/0	c0017	3234	1	0	0	1	0	0	copy fasta	ADCY4	chr14	24313359	24340071
ADCY5_chr3_123277296_123454090	0/1	c0001	3786	206	63	36	68	10	28	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0002	3786	10	0	0	10	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0003	3786	5	4	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0004	3786	5	0	1	2	0	2	copy fasta	ADCY5	chr3	123277296	123454090