JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMBT1_chr10_122555754_122648736	0/0	c0107	7242	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0108	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0109	6468	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0110	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0111	6468	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0112	7242	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0113	6846	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0114	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0115	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0116	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0117	7242	1	0	1	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	c0118	6468	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBX1_chr1_46484836_46521216	1/1	c0001	1134	170	29	21	93	5	20	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0002	1134	105	28	15	51	3	8	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0003	1134	49	1	0	43	0	5	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0004	1134	41	1	27	3	8	2	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0005	1134	27	9	5	12	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0006	1134	12	12	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0007	1134	12	6	2	0	0	4	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0008	1134	3	3	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0009	1134	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0010	1134	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0011	1134	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0012	1134	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0013	1134	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0014	1134	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0015	1134	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0016	1134	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	c0017	1134	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMC1_chr22_38513948_38575183	1/1	c0001	1023	299	71	56	134	8	28	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0002	1023	13	13	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0003	1023	2	2	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0004	1023	2	0	0	2	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0005	1023	2	0	0	2	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0006	1023	1	0	0	1	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0007	1023	1	1	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0008	1023	1	0	0	1	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0009	1023	1	0	0	1	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0010	1023	1	1	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	c0011	1023	1	0	0	1	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMD_chrX_31114222_33216549	0/0	c0001	11058	18	1	2	8	2	5	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0002	11058	11	0	0	8	1	2	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0003	11058	6	2	2	1	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0004	11058	6	0	4	2	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0005	11058	5	1	2	2	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0006	11058	4	0	0	3	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0007	11058	4	1	1	1	1	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0008	11058	3	3	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0009	11058	3	2	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0010	11058	3	1	2	0	0	0	copy fasta	DMD	chrX	31114222	33216549