JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMD_chrX_31114222_33216549	0/0	c0011	11058	3	0	0	3	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0012	11058	2	1	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0013	11058	2	0	1	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0014	11058	2	1	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0015	11058	2	0	1	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0016	11058	2	0	0	2	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0017	11058	2	0	0	0	0	2	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0018	11058	2	0	0	2	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0019	11058	2	0	0	2	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0020	11058	2	2	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0021	11056	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0022	11058	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0023	11058	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0024	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0025	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0026	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0027	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0028	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0029	11059	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0030	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0031	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0032	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0033	11058	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0034	11058	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0035	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0036	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0037	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0038	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0039	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0040	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0041	11058	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0042	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0043	11058	1	0	0	0	1	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0044	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0045	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0046	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0047	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0048	11058	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0049	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0050	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0051	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0052	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0053	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0054	11058	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0055	11058	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0056	11058	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0057	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0058	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0059	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0060	11058	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549