JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMD_chrX_31114222_33216549	0/0	c0061	11058	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	c0062	11058	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMGDH_chr5_78992564_79074674	0/0	c0001	2601	208	46	30	104	6	22	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/1	c0002	2601	57	11	9	31	0	5	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	1/0	c0003	2601	52	5	16	19	1	10	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0004	2601	16	5	4	0	5	2	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0005	2601	10	10	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0006	2601	9	9	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0007	2601	3	1	0	0	1	1	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0008	2601	2	0	0	2	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0009	2601	2	0	1	0	0	1	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0010	2601	2	1	0	0	0	1	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0011	2601	2	2	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0012	2601	1	0	1	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0013	2601	1	1	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0014	2601	1	1	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0015	2601	1	0	0	1	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0016	2601	1	0	0	1	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0017	2601	1	1	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0018	2601	1	1	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0019	2601	1	0	1	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	c0020	2601	1	0	0	0	1	0	copy fasta	DMGDH	chr5	78992564	79074674
DMKN_chr19_35492220_35518649	0/0	c0001	1380	102	10	23	59	0	10	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/1	c0002	1431	62	5	22	9	11	14	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0003	1431	44	2	14	19	3	6	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0004	1428	41	1	3	37	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0005	1443	27	15	2	8	0	2	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0006	1428	25	2	4	13	0	6	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0007	1443	17	0	0	17	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0008	1428	13	11	2	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0009	1419	10	3	0	7	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0010	1419	10	10	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0011	1443	9	5	2	1	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0012	1440	6	1	3	0	1	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0013	1416	6	0	0	6	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0014	1443	6	6	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0015	1416	5	0	0	5	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0016	1380	5	0	0	4	1	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0017	1455	5	0	0	3	0	2	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0018	1380	4	1	0	3	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0019	1431	3	1	1	0	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0020	1443	3	3	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0021	1407	2	2	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	1/0	c0022	1431	2	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0023	1380	2	0	0	2	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0024	1431	2	0	2	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0025	1419	2	2	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0026	1380	2	0	0	2	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0027	1428	2	0	0	2	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0028	1431	2	1	0	0	0	1	copy fasta	DMKN	chr19	35492220	35518649