JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMKN_chr19_35492220_35518649	0/0	c0029	1431	1	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0030	1431	1	0	0	0	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0031	1404	1	0	0	1	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0032	1419	1	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0033	1455	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0034	1419	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0035	1428	1	0	0	1	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0036	1467	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0037	1443	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0038	1440	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0039	1416	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0040	1443	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0041	1443	1	0	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0042	1419	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0043	1443	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0044	1443	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0045	1467	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0046	1443	1	0	0	0	0	1	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0047	1431	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0048	1407	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0049	1431	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0050	1416	1	1	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	c0051	1380	1	0	0	1	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMP1_chr4_87645280_87669357	0/1	c0001	1542	140	21	21	83	3	11	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	1/0	c0002	1542	136	28	26	58	7	16	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0003	1542	71	2	17	39	3	10	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0004	1542	46	33	5	2	1	5	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0005	1542	19	0	2	17	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0006	1542	4	3	1	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0007	1542	3	3	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0008	1542	2	2	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0009	1542	2	2	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0010	1542	2	0	2	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0011	1542	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0012	1542	1	1	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0013	1542	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0014	1542	1	1	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	c0015	1542	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMPK_chr19_45764717_45787490	1/1	c0001	1890	301	63	63	133	12	28	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0002	1890	72	3	16	40	3	10	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0003	1890	12	12	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0004	1890	6	0	0	6	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0005	1890	3	0	0	3	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0006	1890	3	0	1	0	0	2	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0007	1890	3	2	1	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0008	1890	2	1	1	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0009	1890	2	2	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0010	1890	2	2	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0011	1890	2	2	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0012	1890	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490