JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMPK_chr19_45764717_45787490	0/0	c0013	1890	1	0	0	0	1	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0014	1890	1	0	0	0	0	1	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0015	1890	1	0	0	0	0	1	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0016	1890	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0017	1890	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0018	1908	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	c0019	1890	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMRT1_chr9_836697_974090	1/1	c0001	1122	205	67	48	57	11	20	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0002	1122	70	6	13	42	0	9	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0003	1122	10	9	1	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0004	1122	6	5	1	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0005	1122	4	2	1	0	1	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0006	1122	3	3	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0007	1122	2	0	0	0	1	1	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0008	1122	2	2	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0009	1122	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0010	1122	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0011	1122	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	c0012	1122	1	0	0	0	1	0	copy fasta	DMRT1	chr9	836697	974090
DMRT2_chr9_1045357_1062552	0/0	c0001	1686	176	11	27	112	4	22	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	1/0	c0002	1686	109	21	29	41	7	10	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/1	c0003	1686	84	25	13	42	3	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0004	1686	57	6	2	35	1	13	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0005	1686	20	16	2	0	2	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0006	1686	6	0	1	1	1	3	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0007	1686	4	4	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0008	1686	3	3	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0009	1686	3	0	3	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0010	1686	3	3	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0011	1686	2	1	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0012	1686	2	0	0	2	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0013	1686	2	2	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0014	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0015	1686	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0016	1686	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0017	1686	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0018	1686	1	0	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0019	1686	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0020	1686	1	0	0	0	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0021	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0022	1686	1	0	0	1	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0023	1686	1	0	1	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0024	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0025	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0026	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0027	1686	1	0	0	0	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0028	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0029	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	c0030	1686	1	1	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT3_chr9_971655_996732	1/0	c0001	1419	184	33	41	82	10	17	copy fasta	DMRT3	chr9	971655	996732