JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMRT3_chr9_971655_996732	0/0	c0002	1419	110	40	18	42	5	5	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0003	1419	47	0	9	25	0	13	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0004	1419	23	2	7	12	1	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0005	1419	19	0	3	15	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/1	c0006	1419	15	0	0	13	0	1	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0007	1419	13	12	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0008	1419	6	0	1	2	1	2	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0009	1419	5	5	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0010	1419	4	1	1	2	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0011	1419	4	0	0	4	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0012	1419	3	0	0	3	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0013	1419	3	0	0	3	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0014	1419	2	0	0	2	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0015	1419	2	0	0	2	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0016	1419	2	0	0	2	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0017	1419	2	0	2	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0018	1419	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0019	1419	1	0	0	0	1	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0020	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0021	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0022	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0023	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0024	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0025	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0026	1419	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0027	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0028	1419	1	1	0	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0029	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0030	1419	1	0	1	0	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRT3_chr9_971655_996732	0/0	c0031	1419	1	0	0	1	0	0	copy fasta	DMRT3	chr9	971655	996732
DMRTA1_chr9_22441824_22460740	1/1	c0001	1515	263	53	38	123	11	36	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0002	1515	120	27	25	53	5	10	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0003	1515	7	7	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0004	1515	3	3	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0005	1515	3	0	1	2	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0006	1515	2	2	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0007	1515	2	0	0	2	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0008	1515	2	1	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0009	1515	2	0	0	2	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0010	1515	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0011	1515	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0012	1515	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0013	1515	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0014	1515	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0016	1515	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA1_chr9_22441824_22460740	0/0	c0017	1515	1	0	1	0	0	0	copy fasta	DMRTA1	chr9	22441824	22460740
DMRTA2_chr1_50412550_50428443	0/1	c0001	1629	223	66	45	70	8	33	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0002	1623	54	5	9	30	4	6	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0003	1629	7	5	2	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443