JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMRTA2_chr1_50412550_50428443	0/0	c0004	1629	4	4	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0005	1629	3	1	2	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0006	1629	3	0	0	3	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0007	1629	2	1	1	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0008	1629	2	2	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0009	1629	2	2	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0010	1629	2	2	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0011	1629	2	2	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0013	1629	1	0	0	0	0	1	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	1/0	c0014	1629	1	0	0	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0015	1629	1	0	0	1	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0016	1629	1	0	0	1	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTA2_chr1_50412550_50428443	0/0	c0017	1629	1	0	1	0	0	0	copy fasta	DMRTA2	chr1	50412550	50428443
DMRTB1_chr1_53454399_53472488	1/1	c0001	1029	312	83	40	151	10	26	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0002	1035	56	6	8	31	3	8	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0003	1029	8	1	4	0	1	2	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0004	1023	3	0	0	3	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0005	1029	2	2	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0006	1035	2	2	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0007	1029	2	0	0	2	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0008	1029	2	2	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0010	1029	1	0	1	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0011	1029	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0012	1029	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0013	1029	1	0	1	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0014	1029	1	1	0	0	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTB1_chr1_53454399_53472488	0/0	c0015	1029	1	0	0	1	0	0	copy fasta	DMRTB1	chr1	53454399	53472488
DMRTC1B_chrX_72771890_72853803	0/0	c0001	579	20	6	5	6	0	3	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	c0002	579	2	1	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	c0003	578	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	c0004	580	1	0	0	1	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	c0005	577	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1B_chrX_72771890_72853803	0/0	c0006	580	1	0	1	0	0	0	copy fasta	DMRTC1B	chrX	72771890	72853803
DMRTC1_chrX_72867025_72948837	0/0	c0001	579	54	9	5	25	4	11	copy fasta	DMRTC1	chrX	72867025	72948837
DMRTC2_chr19_41840042_41857333	1/0	c0001	1104	231	79	41	86	8	16	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/1	c0002	1104	164	4	33	95	8	23	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	c0003	1104	2	0	0	2	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	c0004	1104	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	c0005	1104	1	0	0	0	0	1	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	c0006	1104	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	c0007	1104	1	0	0	1	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMRTC2_chr19_41840042_41857333	0/0	c0008	1104	1	1	0	0	0	0	copy fasta	DMRTC2	chr19	41840042	41857333
DMTF1_chr7_87147453_87201325	0/1	c0001	2283	207	52	43	88	11	12	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	1/0	c0002	2283	116	23	15	68	1	8	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0003	2283	20	5	2	13	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0004	2283	6	5	1	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0005	2283	3	3	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0006	2283	2	0	0	0	0	2	copy fasta	DMTF1	chr7	87147453	87201325