JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMTF1_chr7_87147453_87201325	0/0	c0007	2283	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0008	2283	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0009	2283	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0010	2283	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0011	2283	1	0	1	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0012	2283	1	1	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0013	2283	1	0	0	1	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTF1_chr7_87147453_87201325	0/0	c0014	2283	1	1	0	0	0	0	copy fasta	DMTF1	chr7	87147453	87201325
DMTN_chr8_22051814_22087525	1/1	c0001	1218	306	84	63	105	16	36	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0002	1218	5	5	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0003	1218	4	3	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0004	1218	3	0	0	3	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0005	1218	2	1	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0006	1218	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0007	1218	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0008	1218	1	1	0	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMTN_chr8_22051814_22087525	0/0	c0009	1218	1	0	1	0	0	0	copy fasta	DMTN	chr8	22051814	22087525
DMWD_chr19_45777947_45797845	0/0	c0001	2025	217	41	40	105	6	25	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/1	c0002	2025	100	16	20	48	5	10	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	1/0	c0003	2025	37	0	6	24	3	3	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0004	2025	28	0	6	11	3	8	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0005	2025	14	0	0	14	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0006	2025	13	13	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0007	2025	9	6	3	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0008	2025	4	0	2	0	0	2	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0009	2025	3	0	1	0	1	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0010	2025	3	3	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0011	2025	3	3	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0012	2025	2	2	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0013	2025	2	0	2	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0014	2025	1	1	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0015	2025	1	1	0	0	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0016	2025	1	0	0	0	0	1	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0017	2025	1	0	0	1	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMWD_chr19_45777947_45797845	0/0	c0018	2025	1	0	0	1	0	0	copy fasta	DMWD	chr19	45777947	45797845
DMXL1_chr5_119066087_119254127	1/0	c0001	9147	78	35	20	5	6	11	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/1	c0002	9147	49	8	12	16	5	7	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0003	9147	23	0	5	14	0	4	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0004	9147	7	7	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0005	9147	6	1	5	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0006	9147	6	2	0	0	0	4	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0007	9147	5	0	0	0	0	5	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0008	9147	4	0	0	4	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0009	9147	4	3	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0010	9147	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0011	9147	3	0	1	0	1	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0012	9147	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0013	9147	3	1	2	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0014	9147	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0015	9147	3	3	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127