JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMXL1_chr5_119066087_119254127	0/0	c0016	9147	2	0	0	1	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0017	9147	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0018	9147	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0019	9147	2	2	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0020	9147	2	0	0	2	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0021	9147	2	0	2	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0022	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0023	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0024	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0025	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0026	9147	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0027	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0028	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0029	9147	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0030	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0031	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0032	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0033	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0034	9147	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0035	9147	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0036	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0037	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0038	9147	1	0	0	1	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0039	9147	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0040	9147	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0041	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0042	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0043	9147	1	0	0	0	0	1	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0044	9147	1	0	1	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0045	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0046	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL1_chr5_119066087_119254127	0/0	c0047	9147	1	1	0	0	0	0	copy fasta	DMXL1	chr5	119066087	119254127
DMXL2_chr15_51442791_51627771	1/0	c0001	9177	136	34	21	68	0	12	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/1	c0002	9177	74	15	16	34	1	7	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0003	9177	28	5	13	1	2	7	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0004	9177	24	0	1	21	0	2	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0005	9177	12	0	0	11	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0006	9177	11	0	0	11	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0007	9177	11	0	0	11	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0008	9177	7	6	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0009	9177	6	6	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0010	9177	4	4	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0011	9177	3	2	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0012	9177	3	3	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0013	9177	2	2	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0014	9177	2	0	2	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0015	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0016	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0017	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0018	9177	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771