JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DMXL2_chr15_51442791_51627771	0/0	c0019	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0020	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0021	9177	1	0	0	0	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0022	9177	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0023	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0024	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0025	9177	1	0	0	0	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0026	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0027	9177	1	0	0	0	0	1	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0028	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0029	9177	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0030	9177	1	0	0	0	1	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0031	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0032	9177	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0033	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0034	9177	1	1	0	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0035	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0036	9177	1	0	0	1	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DMXL2_chr15_51442791_51627771	0/0	c0037	9177	1	0	1	0	0	0	copy fasta	DMXL2	chr15	51442791	51627771
DNA2_chr10_68409064_68476973	1/1	c0001	3183	163	34	32	66	8	21	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0002	3183	73	12	5	48	3	5	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0003	3183	40	2	8	20	0	10	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0004	3183	9	9	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0005	3183	7	6	1	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0006	3183	6	2	0	0	1	3	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0007	3183	4	4	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0008	3183	4	4	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0009	3183	3	3	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0010	3183	2	1	1	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0011	3183	2	2	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0012	3183	2	2	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0013	3172	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0014	3183	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0015	3183	1	0	0	1	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0016	3183	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0017	3183	1	0	0	1	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0018	3183	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0019	3183	1	0	1	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0020	3183	1	0	0	0	0	1	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0021	3183	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0022	3183	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNA2_chr10_68409064_68476973	0/0	c0023	3183	1	1	0	0	0	0	copy fasta	DNA2	chr10	68409064	68476973
DNAAF10_chr2_68124805_68162527	1/1	c0001	1074	342	74	71	151	10	34	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	c0002	1074	84	18	14	40	4	8	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	c0003	1074	3	0	1	0	0	2	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	c0004	1074	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	c0005	1074	1	1	0	0	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF10_chr2_68124805_68162527	0/0	c0006	1074	1	0	0	1	0	0	copy fasta	DNAAF10	chr2	68124805	68162527
DNAAF11_chr8_132565416_132680545	1/0	c0001	1401	117	7	17	68	8	16	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/1	c0002	1401	97	39	20	24	2	11	copy fasta	DNAAF11	chr8	132565416	132680545