Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCY5_chr3_123277296_123454090	0/0	c0005	3786	3	0	2	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0006	3786	3	0	0	3	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0007	3786	3	0	0	0	0	3	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0008	3786	2	2	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	1/0	c0009	3786	2	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0010	3786	2	2	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0011	3786	2	1	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0012	3786	2	0	0	2	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0013	3786	2	0	2	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0014	3786	1	0	1	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0015	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0016	3786	1	0	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0017	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0018	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0019	3786	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0020	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0021	3786	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0022	3786	1	1	0	0	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0023	3786	1	0	0	0	0	1	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0024	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0025	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY5_chr3_123277296_123454090	0/0	c0026	3786	1	0	0	1	0	0	copy fasta	ADCY5	chr3	123277296	123454090
ADCY6_chr12_48761194_48794089	1/0	c0001	3507	132	37	25	46	5	18	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/1	c0002	3507	98	13	18	57	2	7	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0003	3507	17	4	4	0	4	5	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0004	3507	10	9	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0005	3507	9	9	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0006	3507	7	7	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0007	3507	7	0	5	0	0	2	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0008	3507	3	2	0	0	1	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0009	3507	2	0	2	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0010	3507	2	0	0	0	2	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0011	3507	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0012	3507	1	0	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0013	3507	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0014	3507	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0015	3507	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0016	3507	1	0	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0017	3507	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0018	3507	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0019	3507	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0020	3507	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0021	3507	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0022	3507	1	0	0	1	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0023	3507	1	1	0	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0024	3507	1	0	1	0	0	0	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0025	3507	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0026	3507	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY6_chr12_48761194_48794089	0/0	c0027	3507	1	0	0	0	0	1	copy fasta	ADCY6	chr12	48761194	48794089
ADCY7_chr16_50261551_50323135	0/1	c0001	3243	257	59	60	92	14	31	copy fasta	ADCY7	chr16	50261551	50323135