JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAAF11_chr8_132565416_132680545	0/0	c0003	1401	42	21	6	6	4	5	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0004	1401	6	6	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0005	1401	4	0	0	4	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0006	1401	4	3	1	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0007	1401	2	0	0	2	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0008	1401	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0009	1401	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0010	1401	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF11_chr8_132565416_132680545	0/0	c0011	1401	1	1	0	0	0	0	copy fasta	DNAAF11	chr8	132565416	132680545
DNAAF1_chr16_84140308_84182918	1/0	c0001	2178	125	31	17	64	2	10	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0002	2178	97	3	21	55	5	13	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0003	2178	36	1	19	10	1	5	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0004	2178	24	3	1	13	3	4	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0005	2178	19	1	2	11	0	5	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0006	2178	17	0	6	11	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0007	2178	15	1	2	9	0	3	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0008	2178	13	13	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0009	2178	11	9	2	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0010	2178	10	2	2	6	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0011	2178	8	0	0	8	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0012	2178	7	6	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0013	2178	7	0	0	7	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0014	2178	6	0	3	0	0	3	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0015	2178	5	5	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0016	2178	5	0	4	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0017	2178	4	0	1	0	3	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0018	2178	3	0	0	2	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0019	2178	3	0	0	3	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0020	2178	3	3	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0021	2178	2	0	0	2	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0022	2178	2	2	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0023	2178	2	2	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/1	c0024	2178	2	0	0	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0025	2178	2	2	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0026	2178	2	2	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0027	2178	2	0	0	2	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0028	2178	2	1	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0029	2178	2	0	2	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0030	2178	2	0	0	0	2	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0031	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0032	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0033	2178	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0034	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0035	2178	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0036	2178	1	0	0	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0037	2178	1	0	0	0	0	1	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0038	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0039	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0040	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0041	2178	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918