JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAAF1_chr16_84140308_84182918	0/0	c0042	2178	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0043	2178	1	1	0	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0044	2178	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0045	2178	1	0	0	1	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0046	2178	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0047	2178	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF1_chr16_84140308_84182918	0/0	c0048	2178	1	0	1	0	0	0	copy fasta	DNAAF1	chr16	84140308	84182918
DNAAF2_chr14_49620174_49640244	1/0	c0001	2514	160	27	19	93	7	13	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/1	c0002	2514	93	17	29	22	7	17	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0003	2514	47	26	15	0	3	3	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0004	2514	22	18	4	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0005	2514	4	0	0	4	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0006	2514	2	2	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0007	2514	2	2	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0008	2514	2	1	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0009	2514	2	2	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0010	2514	1	0	0	0	1	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0011	2514	1	0	0	0	0	1	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0012	2514	1	0	1	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0013	2514	1	1	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0014	2514	1	1	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0015	2514	1	0	1	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0016	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0017	2514	1	0	0	0	0	1	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0018	2514	1	1	0	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0019	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0020	2514	1	0	1	0	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0021	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0022	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0023	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0024	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0025	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0026	2514	1	0	0	1	0	0	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF2_chr14_49620174_49640244	0/0	c0027	2514	1	0	0	0	0	1	copy fasta	DNAAF2	chr14	49620174	49640244
DNAAF3_chr19_55153665_55171613	1/1	c0001	1626	178	20	40	76	13	27	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0002	1626	73	7	23	39	0	4	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0003	1626	70	47	9	9	0	5	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0004	1626	56	12	5	28	1	10	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0005	1626	4	4	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0006	1626	4	1	1	0	0	2	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0007	1626	4	0	0	4	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0008	1626	2	0	0	0	0	2	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0009	1626	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0010	1626	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0011	1626	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0012	1626	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0013	1626	1	0	0	1	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0014	1626	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF3_chr19_55153665_55171613	0/0	c0015	1626	1	1	0	0	0	0	copy fasta	DNAAF3	chr19	55153665	55171613
DNAAF4_chr15_55425308_55513234	0/0	c0001	1263	145	19	34	65	9	18	copy fasta	DNAAF4	chr15	55425308	55513234