JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAAF4_chr15_55425308_55513234	1/1	c0002	1263	70	21	17	15	3	12	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0003	1263	58	6	5	41	0	6	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0004	1263	26	24	2	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0005	1263	26	14	4	2	1	5	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0006	1263	8	3	1	0	1	3	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0008	1263	1	0	1	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0009	1263	1	0	0	1	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0010	1263	1	1	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF4_chr15_55425308_55513234	0/0	c0011	1263	1	1	0	0	0	0	copy fasta	DNAAF4	chr15	55425308	55513234
DNAAF5_chr7_721699_791475	1/1	c0001	2568	121	21	16	74	3	5	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0002	2568	100	29	21	33	5	12	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0003	2568	84	14	19	32	1	18	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0004	2568	28	4	11	0	3	10	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0005	2568	14	14	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0006	2568	6	0	0	6	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0007	2568	2	2	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0008	2568	2	0	0	2	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0009	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0010	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0011	2568	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0012	2568	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0013	2568	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0014	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0015	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0016	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0017	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0018	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0019	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0020	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0021	2568	1	0	0	0	0	1	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0022	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0023	2568	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0024	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0025	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0026	2568	1	0	1	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0027	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0028	2568	1	0	0	1	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF5_chr7_721699_791475	0/0	c0029	2568	1	1	0	0	0	0	copy fasta	DNAAF5	chr7	721699	791475
DNAAF6_chrX_107201611_107249247	1/1	c0001	645	295	74	43	143	5	28	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF6_chrX_107201611_107249247	0/0	c0002	644	1	0	0	1	0	0	copy fasta	DNAAF6	chrX	107201611	107249247
DNAAF8_chr16_4729537_4754396	1/1	c0001	1563	130	51	18	46	2	11	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0002	1563	114	3	25	61	9	16	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0003	1563	42	0	12	30	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0004	1563	22	18	0	4	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0005	1563	10	1	0	1	1	7	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0006	1563	7	1	3	3	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0007	1563	6	0	4	0	1	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0008	1563	6	6	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0009	1563	6	0	0	6	0	0	copy fasta	DNAAF8	chr16	4729537	4754396