JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAAF8_chr16_4729537_4754396	0/0	c0010	1563	6	0	0	6	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0011	1563	4	0	1	0	2	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0012	1563	4	0	0	4	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0013	1563	3	0	2	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0014	1563	2	0	2	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0015	1563	2	0	2	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0016	1563	2	2	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0017	1563	2	2	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0018	1563	2	2	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0019	1563	2	0	1	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0020	1563	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0021	1563	1	1	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0022	1563	1	0	0	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0023	1563	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0024	1563	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0025	1563	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0026	1563	1	0	0	0	1	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0027	1563	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0028	1563	1	1	0	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0029	1563	1	0	0	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0030	1563	1	0	0	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0031	1563	1	0	0	0	0	1	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0032	1563	1	0	0	1	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF8_chr16_4729537_4754396	0/0	c0033	1563	1	0	1	0	0	0	copy fasta	DNAAF8	chr16	4729537	4754396
DNAAF9_chr20_3244306_3412669	0/1	c0001	3534	110	15	27	51	6	10	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0002	3534	93	17	18	48	4	6	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0003	3534	78	32	9	28	4	5	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0004	3534	43	11	0	28	0	4	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	1/0	c0005	3534	12	4	5	0	1	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0006	3534	6	1	0	5	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0007	3534	3	0	0	0	0	3	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0008	3534	2	2	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0009	3534	1	0	0	0	1	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0010	3534	1	0	0	0	0	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0011	3534	1	0	1	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0012	3534	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0013	3534	1	0	0	0	0	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0014	3534	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0015	3534	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0016	3534	1	0	0	0	0	1	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0017	3534	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0018	3534	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0019	3534	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0020	3534	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0021	3534	1	1	0	0	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0022	3534	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAAF9_chr20_3244306_3412669	0/0	c0023	3534	1	0	0	1	0	0	copy fasta	DNAAF9	chr20	3244306	3412669
DNAH10_chr12_123757301_123940714	0/0	c0001	13770	10	5	2	2	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0002	13770	8	0	2	3	0	3	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/1	c0003	13770	8	1	2	3	1	0	copy fasta	DNAH10	chr12	123757301	123940714