JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH10_chr12_123757301_123940714	0/0	c0054	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0055	13770	1	0	0	1	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0056	13770	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0057	13770	1	0	0	0	1	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0058	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0059	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0060	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0061	13770	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0062	13770	1	0	0	1	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0063	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0064	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0065	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0066	13770	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0067	13770	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0068	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0069	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0070	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0071	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0072	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0073	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0074	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0075	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0076	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0077	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0078	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0079	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0080	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0081	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0082	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0083	13770	1	0	0	1	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0084	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0085	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0086	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0087	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0088	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0089	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0090	13770	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0091	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0092	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0093	13770	1	0	0	0	0	1	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0094	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0095	13770	1	0	1	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0096	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH10_chr12_123757301_123940714	0/0	c0097	13770	1	1	0	0	0	0	copy fasta	DNAH10	chr12	123757301	123940714
DNAH11_chr7_21538039_21906839	0/0	c0001	13551	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0002	13551	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0003	13551	2	0	0	0	2	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0004	13551	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0005	13551	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0006	13551	2	1	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839