JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH11_chr7_21538039_21906839	0/0	c0007	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0008	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0009	13551	2	0	1	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0010	13551	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0011	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0012	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0013	13551	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0014	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0015	13551	2	0	2	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0016	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0017	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0018	13551	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0019	13551	2	2	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0020	13551	2	0	0	2	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0021	13551	2	0	0	1	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0022	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0023	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	1/0	c0024	13551	1	0	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0025	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0026	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0027	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0028	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0029	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0030	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0031	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0032	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0033	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0034	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0035	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0036	13551	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0037	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0038	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0039	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0040	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0041	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0042	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0043	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0044	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0045	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0046	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0047	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0048	13551	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0049	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0050	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/1	c0051	13551	1	0	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0052	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0053	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0054	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0055	13551	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0056	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839