Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCY7_chr16_50261551_50323135	0/0	c0002	3243	20	5	5	2	2	6	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0003	3243	6	5	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0004	3243	6	6	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0005	3243	5	5	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0006	3243	4	4	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0007	3243	4	0	0	4	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0008	3243	4	4	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0009	3243	3	0	0	3	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0010	3243	3	0	1	0	0	2	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0011	3243	3	0	0	3	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	1/0	c0012	3243	2	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0013	3243	2	0	2	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0014	3243	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0015	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0016	3243	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0017	3243	1	0	0	0	0	1	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0018	3243	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0019	3243	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0020	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0021	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0022	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0023	3243	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0024	3243	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0025	3243	1	1	0	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0026	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0027	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0028	3243	1	0	1	0	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0029	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0030	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0031	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY7_chr16_50261551_50323135	0/0	c0032	3243	1	0	0	1	0	0	copy fasta	ADCY7	chr16	50261551	50323135
ADCY8_chr8_130775301_131045909	0/1	c0001	3756	69	1	14	43	4	6	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	1/0	c0002	3756	67	13	13	27	2	11	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0003	3756	38	27	6	2	1	2	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0004	3756	24	8	8	5	2	1	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0005	3756	17	0	4	10	1	2	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0006	3756	4	4	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0007	3756	4	3	1	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0008	3756	3	2	1	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0009	3756	3	1	2	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0010	3756	3	1	2	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0011	3756	3	3	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0012	3756	2	0	2	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0013	3756	1	0	1	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0014	3756	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0015	3756	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0016	3756	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0017	3756	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0018	3756	1	1	0	0	0	0	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0019	3756	1	0	0	1	0	0	copy fasta	ADCY8	chr8	130775301	131045909