JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH11_chr7_21538039_21906839	0/0	c0257	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0258	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0259	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0260	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0261	13551	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0262	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0263	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0264	13551	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0265	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0266	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0267	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0268	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0269	13551	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0270	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0271	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0272	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0273	13551	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0274	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0275	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0276	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	c0277	13551	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH12_chr3_57288700_57549344	0/0	c0001	11883	40	6	10	14	2	8	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0002	11883	39	1	8	28	0	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/1	c0003	11883	24	13	5	0	2	3	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0004	11883	17	2	4	7	0	4	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0005	11883	11	0	1	10	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0006	11883	9	0	6	0	1	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0007	11883	8	1	5	1	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0008	11883	4	4	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0009	11883	3	3	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0010	11883	3	2	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0011	11883	3	1	1	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0012	11883	3	2	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0013	11883	3	0	0	0	0	3	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0014	11883	3	2	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0015	11883	3	0	3	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0016	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0017	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0018	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0019	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0020	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0021	11883	2	0	0	2	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0022	11883	2	0	0	0	0	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0023	11883	2	0	0	2	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0024	11883	2	0	0	0	0	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0025	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0026	11883	2	0	0	1	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0027	11883	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0028	11883	2	0	0	2	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0029	11883	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344