JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
DNAH12_chr3_57288700_57549344	0/0	c0030	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0031	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0032	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0033	11883	1	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0034	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0035	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0036	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0037	11883	1	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0038	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0039	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0040	11704	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0041	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0042	11883	1	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0043	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0044	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0045	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0046	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0047	11883	1	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0048	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0049	11883	1	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0050	11883	1	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0051	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0052	11894	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0053	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0054	11883	1	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0055	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0056	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0057	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0058	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0059	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0060	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0061	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0062	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0063	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0064	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0065	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0066	11883	1	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0067	11883	1	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0068	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0069	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0070	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0071	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0072	11883	1	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0073	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0074	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0075	11883	1	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0076	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0077	11883	1	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0078	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0079	11883	1	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344