JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH12_chr3_57288700_57549344	1/0	c0080	11883	1	0	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0081	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0082	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0083	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0084	11883	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0085	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0086	11883	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0087	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0088	11883	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0089	11883	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0090	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0091	11883	1	0	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0092	11883	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0093	11883	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0094	11883	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	c0095	11883	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH14_chr1_224924675_225404286	0/0	c0001	13854	21	0	6	11	3	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0002	13854	16	2	3	5	5	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0003	13854	13	0	5	7	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0004	13854	9	0	2	5	0	2	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0005	13854	7	0	5	0	0	2	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0006	13854	6	1	1	0	1	3	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0007	13854	5	4	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0008	13854	5	0	0	5	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0009	13854	4	3	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0010	13854	4	4	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0011	13854	4	0	2	0	0	2	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0012	13854	3	3	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0013	13854	3	2	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0014	13854	3	1	0	1	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0015	13854	3	2	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0016	13854	3	0	3	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0017	13854	3	0	1	1	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0018	13854	3	0	2	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0019	13854	2	2	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0020	13854	2	2	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	1/0	c0021	13854	2	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0022	13854	2	0	1	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0023	13854	2	0	0	2	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0024	13854	2	0	0	0	1	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0025	13854	2	0	0	2	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0026	13854	2	0	0	2	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0027	13854	2	0	1	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0028	13854	2	2	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0029	13854	2	2	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0030	13854	2	0	0	2	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0031	13854	2	0	1	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0032	13854	2	0	0	2	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0033	13854	2	0	0	2	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0034	13854	2	0	0	0	0	2	copy fasta	DNAH14	chr1	224924675	225404286