JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH14_chr1_224924675_225404286	0/0	c0085	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0086	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0087	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0088	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0089	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0090	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0091	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0092	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0093	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0094	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0095	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0096	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0097	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0098	13854	1	0	0	0	1	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0099	13854	1	0	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0100	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0101	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0102	13491	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0103	13854	1	0	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0104	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0105	13854	1	0	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0106	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0107	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0108	13854	1	0	0	0	1	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0109	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0110	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0111	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0112	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0113	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0114	13854	1	0	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0115	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0116	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0117	13854	1	0	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0118	13854	1	0	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0119	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0120	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0121	13854	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0122	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0123	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0124	13854	1	0	0	1	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0125	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	c0126	13854	1	1	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH17_chr17_78418697_78582396	0/0	c0001	13389	6	0	2	4	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0002	13389	3	0	3	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0003	13389	3	0	1	2	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0004	13389	3	0	0	3	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0005	13389	2	0	2	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0006	13389	2	2	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0007	13389	2	2	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0008	13389	2	0	0	2	0	0	copy fasta	DNAH17	chr17	78418697	78582396