JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH17_chr17_78418697_78582396	0/0	c0009	13389	2	0	2	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0010	13389	2	0	0	2	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0011	13389	2	0	0	0	0	2	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0012	13389	2	0	0	0	2	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0013	13389	2	0	0	2	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0014	13389	2	2	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0015	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0016	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0017	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0018	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0019	13272	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0020	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0021	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0022	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0023	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0024	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0025	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0026	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0027	13369	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0028	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	1/0	c0029	13389	1	0	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0030	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0031	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0032	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0033	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0034	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0035	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0036	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0037	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0038	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0039	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0040	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0041	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0042	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0043	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0044	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0045	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0046	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0047	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0048	13389	1	0	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0049	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0050	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0051	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0052	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0053	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0054	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0055	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0056	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0057	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0058	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396