JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH17_chr17_78418697_78582396	0/0	c0109	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0110	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0111	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0112	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0113	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0114	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0115	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0116	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0117	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0118	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0119	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0120	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0121	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0122	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0123	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0124	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0125	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0126	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0127	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0128	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0129	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0130	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0131	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0132	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0133	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0134	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0135	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0136	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0137	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0138	13389	1	0	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0139	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0140	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0141	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0142	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0143	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0144	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0145	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0146	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0147	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0148	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0149	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0150	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0151	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0152	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0153	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0154	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0155	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0156	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0157	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0158	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396