JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH17_chr17_78418697_78582396	0/0	c0159	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0160	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0161	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0162	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0163	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0164	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0165	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0166	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0167	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0168	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0169	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0170	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0171	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0172	13389	1	0	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0173	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0174	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0175	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0176	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0177	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0178	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0179	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0180	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0181	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0182	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0183	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0184	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0185	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0186	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0187	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0188	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0189	13389	1	0	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0190	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0191	13389	1	0	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0192	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0193	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0194	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0195	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0196	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0197	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0198	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0199	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0200	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0201	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0202	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0203	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0204	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0205	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0206	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0207	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0208	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396