Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADCY8_chr8_130775301_131045909	0/0	c0020	3756	1	0	0	0	0	1	copy fasta	ADCY8	chr8	130775301	131045909
ADCY8_chr8_130775301_131045909	0/0	c0021	3756	1	0	0	0	0	1	copy fasta	ADCY8	chr8	130775301	131045909
ADCY9_chr16_3957653_4121442	0/0	c0001	4062	35	26	2	7	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0002	4062	35	22	2	3	1	7	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0003	4062	29	2	14	7	1	5	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0004	4062	29	5	8	11	4	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0005	4062	27	0	4	22	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0006	4062	20	0	2	8	1	9	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0007	4062	19	0	5	11	0	3	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0008	4062	17	0	1	15	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0009	4062	15	8	1	6	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0010	4062	13	0	3	10	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0011	4062	5	0	4	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0012	4062	4	1	0	3	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/1	c0013	4062	4	0	1	0	0	2	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0014	4062	4	0	0	4	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0015	4062	4	4	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0016	4062	3	0	0	3	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0017	4062	3	2	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0018	4062	3	1	2	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0019	4062	2	0	0	1	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0020	4062	2	0	0	2	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0021	4062	2	2	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0022	4062	2	2	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0023	4062	2	2	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0024	4062	2	2	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	1/0	c0025	4062	1	0	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0026	4062	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0027	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0028	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0029	4062	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0030	4062	1	0	0	0	1	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0031	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0032	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0033	4062	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0034	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0035	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0036	4062	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0037	4062	1	0	1	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0038	4062	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0039	4062	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0040	4062	1	0	0	0	1	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0041	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0042	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0043	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0044	4062	1	0	0	0	0	1	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0045	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0046	4062	1	0	0	1	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0047	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442
ADCY9_chr16_3957653_4121442	0/0	c0048	4062	1	1	0	0	0	0	copy fasta	ADCY9	chr16	3957653	4121442