JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH17_chr17_78418697_78582396	0/0	c0209	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0210	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0211	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0212	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0213	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0214	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0215	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0216	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0217	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0218	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0219	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0220	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0221	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0222	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0223	13389	1	0	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0224	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0225	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0226	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0227	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0228	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0229	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0230	13389	1	0	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	c0231	13389	1	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH1_chr3_52311319_52405492	1/0	c0001	12798	41	13	8	10	1	8	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0002	12798	16	1	7	1	1	6	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0003	12798	11	1	2	3	2	3	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0004	12798	11	1	7	0	1	2	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0005	12798	9	8	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0006	12798	9	9	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0007	12798	7	7	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0008	12798	6	0	4	1	1	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0009	12798	6	6	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0010	12798	4	4	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0011	12798	3	3	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0012	12798	3	3	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0013	12798	3	2	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0014	12798	3	0	0	3	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0015	12798	2	1	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0016	12798	2	0	0	2	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0017	12798	2	2	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0018	12798	2	2	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0019	12798	2	0	0	2	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0020	12798	2	1	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0021	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0022	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0023	12798	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0024	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0025	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0026	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0027	12798	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492