JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH1_chr3_52311319_52405492	0/0	c0028	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0029	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0030	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0031	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0032	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0033	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0034	12798	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0035	12798	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0036	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0037	12798	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0038	12798	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0039	12798	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0040	12798	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0041	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0042	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0043	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0044	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0045	12798	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0046	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/1	c0047	12798	1	0	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0048	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0049	12798	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0050	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0051	12798	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0052	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0053	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0054	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0055	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0056	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0057	12798	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	c0058	12798	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH2_chr17_7712744_7838742	0/0	c0001	13284	19	3	5	7	0	4	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/1	c0002	13284	18	0	10	0	2	5	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0003	13284	17	2	1	14	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0004	13284	16	1	0	15	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0005	13284	12	1	6	3	0	2	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0006	13284	10	10	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0007	13284	9	0	5	4	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0008	13284	8	0	5	2	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0009	13284	6	0	5	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0010	13284	5	5	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0011	13284	5	0	4	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0012	13284	5	0	1	4	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0013	13284	4	4	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0014	13284	4	0	1	0	1	2	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	1/0	c0015	13284	4	3	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0016	13284	4	3	1	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0017	13284	4	0	0	4	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0018	13284	4	4	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0019	13284	4	0	0	3	0	1	copy fasta	DNAH2	chr17	7712744	7838742