JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DNAH2_chr17_7712744_7838742	0/0	c0120	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0121	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0122	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0123	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0124	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0125	13284	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0126	13284	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0127	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0128	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0129	13284	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0130	13284	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0131	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0132	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0133	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0134	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0135	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0136	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0137	13284	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0138	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0139	13284	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0140	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0141	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	c0142	13284	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH3_chr16_20928111_21155846	0/0	c0001	12213	26	1	4	16	2	3	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0002	12213	20	3	2	13	1	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	1/1	c0003	12213	12	7	1	1	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0004	12213	11	3	3	3	0	2	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0005	12213	9	1	4	2	1	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0006	12213	8	0	1	7	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0007	12213	7	0	0	7	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0008	12213	5	0	1	3	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0009	12213	5	5	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0010	12213	5	5	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0011	12213	5	3	0	1	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0012	12213	4	4	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0013	12213	4	0	1	3	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0014	12213	3	0	2	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0015	12213	3	0	1	0	0	2	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0016	12213	3	0	2	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0017	12213	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0018	12213	2	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0019	12213	2	0	0	2	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0020	12213	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0021	12213	2	0	1	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0022	12213	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0023	12213	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0024	12213	2	0	2	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0025	12213	2	0	0	0	0	2	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0026	12213	2	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	c0027	12213	2	0	0	1	0	1	copy fasta	DNAH3	chr16	20928111	21155846